Getting the car up off the ground enough to get the box out, in that size of garage would have been a problem, so engine out was probably your best bet. JRW do new flexplates at £75, and spigot bushes at £14 IIRC, both plus p&p &VAT, and you'll need both. Check the spigot on the front of the converter as they can get bent (or even ripped out completely). You might want to replace the front pump seal on the box while you're there, particularly if there are any signs of leakage. On reassembly you need to put the converter into the box and make sure it's fully located before fitting the engine to it.